三黍生物

技术支持
共享数据库

 分子生物学
 
甘薯基因组:
http://public-genomes-ngs.molgen.mpg.de/sweetpotato/

木薯基因组:
https://phytozome.jgi.doe.gov/pz/portal.html#!info?alias=Org_Mesculenta

玉米基因组:
https://www.maizegdb.org/

马铃薯基因组:
http://solanaceae.plantbiology.msu.edu/index.shtml

拟南芥基因组:
https://www.arabidopsis.org/index.jsp

水稻基因组:
http://www.ricedata.cn/gene/

启动子分子:
PlantCARE:http://bioinformatics.psb.ugent.be/webtools/plantcare/html/

亚细胞定位:
Plant-PLoc: ttp://www.csbio.sjtu.edu.cn/bioinf/plant/#

蛋白互作预测:
CRISP:
DSDecode : http://dsdecode.scgene.com/
 
 
分析测试
LC-MS

· MetWare DB - from Metware Biotechnology Co., Ltd.
· Metlin DB - from Scripps
· MassBank DB - from the Japanese metabolomics initiative
· MassFrontier - spectral tree MS/MS + CID collection
· HMDB - Human Metabolome DB with multiple search interfaces (adducts, accurate masses)
· MassBank - Large curated repository of MS1 and MS/MS spectra (ESI, MALDI, APCI)
· LipidBlast - the largest freely available in-silico MS/MS spectral database for lipid identification
 

GC-MS
· SetupX - LIMS system storing meta-data and annotated GC-MS results from Fiehn Laboratory
· Mass Spectrum Interpreter - a free tool from NIST for MS fragment annotation and the NIST MS Search
· NIST05, Wiley, Palisade electron impact mass spectral databases + retention indices (NIST05)
· SetupX - Open Repository of GC-MS experiments from Fiehnlab, annotated and assigned metabolomic profiling raw data from 1600 public GC-MS samples can be downloaded [content-1] [species]
· MassBase - Download for 2500 GC-MS samples and standards from KAZUSA
 
· mportant small molecule database (compounds, substances, assays)
· Chemical Lookup Service - the largest collection (30 million) of small molecules
· KEGG database - the metabolite and pathway database
· Pathguide - pathway database collection
· Chemspider - search service for small molecules and property data (with programmers API)
· KNApSAcK - Species-Metabolite Relationship Database from NAIST (Kanaya Lab) and RIKEN